Referenced in: none

Automatically associated channels: Kv11.1

Title: A novel structure-based virtual screening model for the hERG channel blockers.

Authors: Lupei Du, Minyong Li, Qidong You, Lin Xia

Journal, date & volume: Biochem. Biophys. Res. Commun., 2007 Apr 20 , 355, 889-94

PubMed link: http://www.ncbi.nlm.nih.gov/pubmed/17331468

Abstract
The hERG potassium channel is a key effector of cardiac repolarization and the blockade of this channel could cause arrhythmia. Thus, hERG channel blockade plays an important role for the potential pro-arrhythmic liability. In this report, binding of blockers to the hERG potassium channel is investigated using a combination of homology modeling, molecular docking, and molecular simulations, where blockade activities are evaluated using the linear regression model of GoldScore fitness. This structure-based virtual screening model is able to estimate the pIC(50) value of a wide range of ligands for the hERG potassium channel. The docked poses for ligands are also consistent with published mutation. Therefore, this model for the prediction of hERG channel blockade has the potential to provide cost-effective virtual screening tools for the evaluation of the cardiac liability of new chemical entities.