Channelpedia

PubMed 20483327


Referenced in Channelpedia wiki pages of: none

Automatically associated channels: Kv1.2 , Slo1



Title: Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel.

Authors: Fatemeh Khalili-Araghi, Vishwanath Jogini, Vladimir Yarov-Yarovoy, Emad Tajkhorshid, Benoît Roux, Klaus Schulten

Journal, date & volume: Biophys. J., 2010 May 19 , 98, 2189-98

PubMed link: http://www.ncbi.nlm.nih.gov/pubmed/20483327


Abstract
The atomic models of the Kv1.2 potassium channel in the active and resting state, originally presented elsewhere, are here refined using molecular dynamics simulations in an explicit membrane-solvent environment. With a minor adjustment of the orientation of the first arginine along the S4 segment, the total gating charge of the channel determined from >0.5 mus of molecular dynamics simulation is approximately 12-12.7 e, in good accord with experimental estimates for the Shaker potassium channel, indicating that the final models offer a realistic depiction of voltage-gating. In the resting state of Kv1.2, the S4 segment in the voltage-sensing domain (VSD) spontaneously converts into a 3(10) helix over a stretch of 10 residues. The 3(10) helical conformation orients the gating arginines on S4 toward a water-filled crevice within the VSD and allows salt-bridge interactions with negatively charged residues along S2 and S3. Free energy calculations of the fractional transmembrane potential, acting upon key charged residues of the VSD, reveals that the applied field varies rapidly over a narrow region of 10-15 A corresponding to the outer leaflet of the bilayer. The focused field allows the transfer of a large gating charge without translocation of S4 across the membrane.